Preprints

Created 11 Oct 2026

Complete ammonia-oxidizing Nitrospira and ammonia-oxidizing archaea as biological supplements for freshwater aquaria

by Umbach, A. K., Ikert, O., Choquet, B., Neufeld, J. D.

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Created 11 Oct 2026

AMMPER-2: A spatially explicit agent-based model of microbial radiobiology with redox dye simulation

by Palacios, D., Lee, J., Sharma, P., Marous, M., Mejia, D., Liddell, L., Gentry, D., Santa Maria, S.

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Created 11 Oct 2026

A domesticated prophage enzyme links bacterial metabolism, episymbiosis and phage fitness

by Nahar, N., Kumar, A., Grossman, A. S., McLean, J., Bor, B., Dong, P.-T., He, X.

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Created 11 Oct 2026

A niche-specific role for ArlRS enables Staphylococcus aureus growth within Kupffer cells

by Hommes, J. W., Orthner, L. M., van der Wal, F., Flannagan, R. S. W., Shim, R., Samaniego Barron, L., Dao, M., Lasa, I., Horswill, A. R., Surewaard, B. G. J.

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Created 11 Oct 2026

Label-free identification of bacterial species using adapted vision transformers

by Hallström, E., Kandavalli, V., Marino Miguelez, M. H., Elf, J., Wählby, C.

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Created 11 Oct 2026

Metagenomic insights into dose-dependent alterations in the tobacco rhizosphere microbiome by pyrroloquinoline quinone

by Liu, L., Liang, Y., Cai, J., Cheng, Y., an, c., Shi, C., Ke, C., Qin, Y., Lai, C.

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Created 11 Oct 2026

HIV remodels germinal centers through T follicular helper cell loss

by Jacobs, D., Abdool, F., Pohlenz, L., Curtis, D., Gill, R., Bush, J. P., Martin, M., Toman, J., Kuhn, W., Maistry, S., Levy, A., Veazey, R. S., Watkins, M., Rappaport, J., Porterfield, J.

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Created 11 Oct 2026

Type 6 secretion systems of adherent-invasive Escherichia coli isolated from Crohn's disease patients shape intestinal microbiota.

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Created 11 Oct 2026

A semi-automated tool for improving Assessments and Lab Tests data annotation in ImmPort

by Tursi, A. R., Fortriede, J. D., Burns, K., Saba, N., Pirani, P., Strub, M. D., Dunn, P., Schaefer, H., Andorf, S.

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Created 11 Oct 2026

Targeted Depletion of rRNAs and Tobamoviruses Enhances Viral Discovery in Wastewater Metatranscriptomes

by Bautista, M. A., Bhardwaj, T., Barbera, D. J., Rulli, S. J., Zorz, J., McCalder, J., Papparis, C., Pang, X., Lee, B. E., Qiu, J., Clark, R. G., Acosta, N., O' Grady, C., Parkins, M. D., Hubert, C. R.

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