Lineage-specific regulation and RNA-associated functions of SATB1 in mature B-cells

Authors

Frayssinhes, J.-Y. A., Meriot, L., Marchiol, T., Pinault, E., Forne, T., Spilianakis, C., PINAUD, E., Le Noir, S.

Abstract

Special AT-rich binding protein 1 (SATB1) is a nuclear matrix-associated transcription factor that orchestrates higher-order chromatin architecture and gene expression in T and B lymphocytes. While SATB1 role in T cells is well-established, its regulation and function in B cells remain underexplored. Here, we showed that Satb1 expression in mature B cells is controlled by alternative promoter usage and splicing, with promoters P1 and P3 dynamically switching upon LPS-induced activation, while P2 remains transcriptionally silent. We identified four Satb1 mRNA isoforms, including two novel transcripts (Delta9 and Delta9Delta11), all of which maintain open reading frames. Satb1 transcription decreases upon activation while SATB1 protein content evolves differently, suggesting post-transcriptional regulation. SATB1 forms a high-molecular-weight complex in B cells, and co-immunoprecipitation mass spectrometry reveals RNA-binding proteins as its predominant interactors. These findings specify SATB1 expression kinetics during B-cell activation and reveal its role as a regulator of RNA splicing in B cells.

Preprint server: bioRxiv
The authors list and abstract were imported from bioRxiv on 26 Jul 2026.

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