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Reticulate evolutionary history underpins a revised generic circumscription of Paphiopedilum (Orchidaceae): insights from integrative phylogenomics and historical biogeography.

Created on 31 Aug 2025

Authors

Marcin Górniak, Natalia Olędrzyńska, Dariusz L Szlachetko

Published in

BMC plant biology. Volume 25. Issue 1. Pages 1167. Aug 30, 2025. Epub Aug 30, 2025.

Abstract

The taxonomy of Paphiopedilum-a diverse group of slipper orchids-has long posed challenges due to high morphological variability and conflicting phylogenetic signals. Despite intensive research, a clear and stable infrageneric classification remains unresolved.
We present an integrative phylogenetic framework based on multiple nuclear low-copy genes (XDH, PHYC, LFY, RAD51, ACO, DEF4), ITS and plastid (matK) sequences, supported by morphological and biogeographical data. Our analyses consistently recovered monophyletic clades corresponding to both historically recognized and newly proposed lineages. Phylogenetic incongruence observed both between different nuclear loci and between nuclear and plastid phylogenies suggests a reticulate evolutionary history shaped by ancient hybridization events and incomplete lineage sorting. Biogeographic reconstructions place the genus' origin in mainland of Southeast Asia during the Miocene, with subsequent radiation influenced by climatic and geological events. As a result, we propose a revised classification recognizing three genera-Parvisepalum, Brachypetalum, and Paphiopedilum s.str.-with the latter subdivided into six subgenera.
This study provides the most comprehensive phylogenetic and taxonomic treatment of Paphiopedilum to date. Our framework reflects evolutionary relationships more accurately than previous systems and offers a stable basis for future research in orchid systematics, conservation, and evolution.

PMID:
40885902
Bibliographic data and abstract were imported from PubMed on 31 Aug 2025.

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