Adaptive multi-model ensembles for improved epidemic projections and decision support.

Authors

Stefania Fiandrino, Daniela Paolotti, Clara Bay, Matteo Chinazzi, Jessica T Davis, Samantha J Bents, Amanda C Perofsky, James Turtle, Pete Riley, Michal Ben-Nun, Sean M Moore, Alex Perkins, Guido Espana, Ajitesh Srivastava, Majd Al Aawar, Shraddha Ramdas Bandekar, Kaiming Bi, Anass Bouchnita, Spencer J Fox, Lauren Ancel Meyers, Srinivasan Venkatramanan, Przemyslaw Porebski, Aniruddha Adiga, Bryan Lewis, Madhav Marathe, Fardad Haghpanah, Eili Klein, Sara L Loo, Sung-Mok Jung, Claire P Smith, Lucie Contamin, Harry Hochheiser, Erica C Carcelén, Emily Howerton, Katriona Shea, Katie Yan, Michael C Runge, Cecile Viboud, Carl A B Pearson, Shaun Truelove, Justin Lessler, Rebecca K Borchering, Matthew Biggerstaff, Nicolò Gozzi, Alessandro Vespignani

Published in

medRxiv : the preprint server for health sciences. Jun 29, 2026. Epub Jun 29, 2026.

Abstract

In recent years, the use of multi-model ensemble projections in infectious disease modeling has become an established methodological approach to account for and integrate across uncertainties and structural differences present in individual models. However, the creation of long-term ensemble projections through these coordinated efforts is resource-intensive, demanding the input of multiple research teams and substantial computational power. This typically limits the ability to refine projections, update the selection of plausible epidemic trajectories, or expand the number of scenarios that can be assessed, even as new empirical data become available. To address this challenge, we define an adaptive ensemble approach that, analogously to a multi-model particle filtering method, dynamically selects individual model trajectories based on observed data throughout the epidemic projection period. We demonstrate the effectiveness of this methodology using the U.S. Flu Scenario Modeling Hub (SMH) projections for influenza hospitalizations in the United States during the 2023-2024 and 2024-2025 winter seasons. Our findings show that the adaptive ensemble yields improved predictive accuracy with respect to the original SMH ensemble projections across several scoring rules and geographical resolutions. Furthermore, the adaptive ensemble approach offers two additional applications: i) the dynamic assignment of posterior probabilities to epidemic scenarios, identifying the most plausible scenario, and representing how reality is captured by a combination of scenarios, and ii) the potential use for short-term forecasting. The adaptive ensemble approach is able to identify the most likely scenarios for the 2023-2024 and 2024-2025 U.S. influenza seasons, even in the early stages of the epidemic. It outperforms, retrospectively, a baseline model in short-term forecasting of influenza hospitalizations in the United States during the two seasons across various horizons and scoring rules, showing potential to contribute to real-time collaborative forecasting challenges such as CDC's FluSight. The proposed approach offers an efficient or low-resource strategy to increase the impact of multi-model epidemic projections by providing real-time support to modeling teams, public health authorities, and decision-makers.

PMID:
42428121
Bibliographic data and abstract were imported from PubMed on 10 Jul 2026.

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