Authors
Jonathan Levinsohn, Samuel Grindel, Bernhard Dumoulin, Amin Abedini, Carolina Conte, Aria Zheyuan Huang, Rena Levin-Klein, Boaz Weisz, Grace Rabinowitz, Andi M Bergeson, Eunji Ha, Konstantin A Klötzer, Nancy Zhang, Paul Titchenell, Mingyao Li, Joo-Seop Park, Juan Pablo Arroyo, Laura S Finn, Kotaro Sasaki, Pazit Beckerman, Oren Pleniceanu, Paola Romagnani, Alex J Hughes, Katalin Susztak
Published in
Nature genetics. Jul 30, 2026. Epub Jul 30, 2026.
Abstract
Evolution has used cell-cell communication as a strategy to coordinate organ development, enabling the reproducible generation of intricate structures. Classically, these interactions have been studied one at a time in model organisms, limiting our understanding of how cellular interplay coordinates human development. We investigated human kidney development using single-cell RNA sequencing and spatial transcriptomics, analyzing over 700,000 cells. By mapping gene expression and differentiation trajectories in space, we define the spatial organization of kidney development. Our analysis revealed unrecognized plasticity, showing that cell fate established during early patterning can be later revised. This plasticity provides a potential mechanism for how cell fate is robustly established in complex patterned tissues. Additionally, through a genome-wide, spatially aware cell-cell interaction analysis, we link localized ligand signals to cell fate decisions. We also define biologically meaningful cellular neighborhoods based on aggregated extracellular cues, providing a blueprint to understand the coordination of human development at scale.
PMID:
42533102
Bibliographic data and abstract were imported from PubMed on 31 Jul 2026.
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