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Dynamical and conformational behavior of a polymer in a crowded solution.

Created on 02 Sep 2026

Authors

Setarehalsadat Changizrezaei, Colin Denniston

Published in

The Journal of chemical physics. Volume 165. Issue 9. Sep 07, 2026.

Abstract

We investigate the structure and dynamics of a polymer in a fluid containing mobile spherical colloidal crowders of radius R. We compare and contrast the behavior with Langevin dynamics (LD) and lattice Boltzmann molecular dynamics (LBMD), the latter incorporating long-range hydrodynamic interactions. Both the colloid size relative to the monomer radius r and the volume fraction ϕ are varied to determine how crowding modifies polymer behavior. Increasing volume fraction induces polymer compaction, with the mechanism strongly dependent on the size ratio R/r. Small colloids primarily modify the short-wavelength polymer conformation, causing self-avoiding-walk-like behavior to persist to shorter length scales, whereas large colloids reduce the effective long-wavelength Flory exponent, indicating a degraded solvent quality consistent with a confinement-blob picture. Polymer diffusion exhibits distinct behavior in LD and LBMD. In LD, diffusion decreases rapidly and depends strongly on R/r; a phenomenological scaling involving ln(1 + R/r) captures this size dependence, and additional scaling with Rg reduces scatter, indicating polymer-scale correlations induced by crowding. In contrast, LBMD diffusion follows an effective-medium-like exponential dependence on concentration, governed by hydrodynamic coupling. Rouse-mode analysis identifies three regimes: scaling breakdown at low volume fraction, Zimm-like behavior at intermediate density in both LD and LBMD, and, at high density, hydrodynamic screening in LBMD with confinement-dominated dynamics in LD.

PMID:
42684043
Bibliographic data and abstract were imported from PubMed on 02 Sep 2026.

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