A biphasic spatiotemporal non-homologous end joining model coupled with Monte Carlo DNA damage data for chromosome aberration prediction.

Authors

Man Zhao, Jianan Wu, Guomin Huang, Chunling Zheng, Xiaoyan Huang, Ying Liang

Published in

Physics in medicine and biology. Volume 71. Issue 17. Sep 11, 2026. Epub Sep 11, 2026.

Abstract

Objective.This study extends a DNA damage simulation package to incorporate a biphasic spatiotemporal non-homologous end joining (NHEJ) repair framework. The aim is to predict radiation induced chromosome aberrations for various beam qualities and dose rates from an independent parameter set.Approach.A biphasic NHEJ kinetic model, characterized by fast and slow components with experimentally constrained repair rate constants (λ_f= 2.48 h^-1andλ_s= 0.408 h^-1) and slow portion (η_DSB= 19%), was coupled to a DNA end diffusion process (D= 0.1 μm²h^-1). DNA damage data from Monte Carlo-based biophysical program was used as input, while different types of chromosome aberrations were generated as output. The extended framework was benchmarked against chromosome aberration measurements in human fibroblasts under acuteγ-rays,αparticles, and chronic low dose-rateγ-ray irradiations. All parameters were obtained from independent measurements without fitting to chromosome aberration data. Model performance was evaluated using the coefficient of determination (R²).Main Results.For acuteγ-rays andαparticles, the proposed model reproduced the dose-response curves of dicentrics and interstitial deletions with reasonable accuracy, while larger deviations were observed for rings and terminal deletions. The corresponding total-aberrationR²were 0.973 and 0.947. Notably, the inclusion of spatiotemporal repair dynamics substantially improved agreement of rings and terminal deletions forα-particles compared to a pure distance-dependent model. Simulations of chronicγ-ray irradiations reproduced total aberration yields at 6.3 cGy h^-1withR²= 0.968, while the 2.8 cGy h^-1case exhibited notable deviation withR²= - 0.517. Sensitivity analyses suggested model stability and robustness with all sensitivity coefficients remaining below 1.3.Significance.By integrating spatial diffusion and biphasic repair kinetics, the proposed model provides a quantitative link between microdosimetric energy deposition and macroscopic chromosome aberrations. The approach offers a foundation for mechanistic modeling of relative biological effectiveness in particle therapy.

PMID:
42723441
Bibliographic data and abstract were imported from PubMed on 11 Sep 2026.

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