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An isocaudomer-assisted AND-gate Cas12a biosensor for dual-gene identification of methicillin-resistant Staphylococcus aureus.

Created on 14 Sep 2026

Authors

Yuanzhao Hu, Xianyao Zhang, Changhua He, Hongliang Wang, Haimei Mao, Yi Wan, Zhiqing Yang, Yingzi Lin

Published in

The Analyst. Sep 14, 2026. Epub Sep 14, 2026.

Abstract

Methicillin-resistant Staphylococcus aureus (MRSA) is commonly identified by detection of the mecA resistance gene, but reliance on a single marker can lead to false positives, since mecA also occurs in non-MRSA organisms. Here, we report an socaudomer-assisted A̲N̲D̲-gate C̲a̲s̲12a biosensor (iCasAND) for improved discrimination of MRSA by detecting the S. aureus-specific nuc gene and the methicillin-resistance gene mecA. Amplicons of both genes are digested by isocaudomer restriction enzymes (BglII and BamHI) to generate complementary sticky ends that self-assemble into split dsDNA activators of Cas12a trans-cleavage. Fluorescence is produced only when both genes are present, satisfying the AND logic condition, while T4 DNA ligase promotes complete activator formation, enhancing the signal-to-background ratio. The iCasAND system achieves a detection limit of 7682.45 ag μL-1 and a sensitivity of 45.28 CFU mL-1, discriminates MRSA from closely related pathogens, and demonstrates 100% concordance in samples from an artificial tilapia infection model. This enzyme-assisted, logic-controlled Cas12a strategy enhances specificity without requiring multiplexed crRNAs and simplifies reagents and workflow, offering a highly specific, programmable, multi-step biosensing strategy for the detection of multidrug- resistant bacteria.

PMID:
42734630
Bibliographic data and abstract were imported from PubMed on 14 Sep 2026.

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