On Serine Octamer Substitution Reactions.

Authors

Brison A Shira, Alana K E Thomas, R Graham Cooks

Published in

Rapid communications in mass spectrometry : RCM. Volume 40. Issue 23. Pages e70182. Dec 15, 2026.

Abstract

Monomeric amino acids substitute into the ionized serine octamer (Ser₈), a magic number cluster that exhibits chiral behavior. Small biomolecules, such as amino acids (AA), substitute into the octamer enantioselectively, giving Ser₇AAH⁺ and Ser₆AA₂H⁺ favoring clusters of all L- or all D-chirality. While the formation of Ser₈H⁺ has been well studied, its substitution reactions need further investigation. The fact that water microdroplets readily produce Ser₈H⁺, which undergoes enantiospecific substitution reactions perhaps gives this topic relevance to origins of life chemistry.
The substitution reactions of several proteogenic AA's (Ala, Leu, isoLeu, Pro, Phe, and Val), along with prebiotically relevant isomers (norVal and isoVal), were investigated using a quadrupole ion trap mass spectrometer to gain insight into the determinants of the chiral behavior. Rather than using isotopically labeled enantiomers, as in previous work, cluster formation was assessed using samples of variable chiral composition and concentration.
Substitution enantioselectivity was confirmed, though in the case of some double substitutions and the substitution of nonproteogenic isomers, the homochiral preference was decreased or inverted, an observation which is attributed to the disruption of the highly ordered noncovalent contacts of the parent Ser₈ cluster. Additionally, the data suggest that octamer formation is consecutive: Ser₈H⁺ forms first, followed by substitution of AA to form Ser₇AAH⁺, sometimes followed by a second substitution to form Ser₆AA₂H⁺.
This investigation illustrates how chiral chemistry using MS must operate through weak but chirality-sensitive forces while avoiding dominance of stronger but chirality-insensitive reaction drivers; namely the propensity of a chiral organic base to acquire the charge of a proton affiliated with other chiral molecules. These results are significant because chiral molecular clusters are fundamentally interesting. Understanding the origins of their enantioselectivity contributes to a general understanding of how small molecules may recognize chirality in reaction partners and accumulate enantiomeric excess.

PMID:
42750421
Bibliographic data and abstract were imported from PubMed on 17 Sep 2026.

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