Accounting for Missed Events in the Bayesian Modeling of IP₃R2 Multimodal Gating.

Authors

Schayma Ben Marzougui, Audrey Denizot, Hugues Berry

Published in

Biophysical journal. Oct 07, 2026. Epub Oct 07, 2026.

Abstract

The Inositol 1,4,5-trisphosphate receptor channel (IP₃R) is an important calcium channel involved in calcium-induced calcium release, playing a prominent role in intracellular calcium signaling. However, accurately characterizing its gating behavior remains a challenge, particularly due to the temporal resolution of patch clamp techniques that is not large enough to detect all short-lived events. This limitation can significantly bias the inference of kinetic models describing the receptor activity. To address this issue, we focused on the quantitative analysis of IP₃R2 gating behavior using patch clamp data, with particular attention to missed events. We modeled IP₃R2 channel gating using Hierarchical Markov chains and used a Bayesian approach that integrates missed event correction directly into the likelihood function, enabling more accurate parameter inference and model evaluation. We show that accounting for missed events deeply clarifies the multi-modal model that emerges from model selection. In this new model, the Park and Drive modes both consist of the same 3-state Markov model, with mode-dependent kinetic parameters: the Drive mode stabilizes the closed state directly connected to the open one, whereas the Park mode stabilizes the other closed state, that is not connected to the open one. Intermediate Ca²⁺ concentrations are found to strongly depress the Drive to Park transition rate, so that the IP₃R2 channel undergoes frequent transitions to the Park mode only for < 50 nM or micromolar Ca²⁺ concentrations. Overall, our approach provides a refined perspective on IP₃R2 channel modeling and highlights the critical importance of accounting for missed events upon model selection based on single-channel recordings.

PMID:
42844839
Bibliographic data and abstract were imported from PubMed on 08 Oct 2026.

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